SMTL ID : 4l99.1 (1 other biounit)

Structure of the RBP from lactococcal phage 1358 in complex with glycerol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: R.237, F.240, N.244, N.289, S.291, A.292, N.341, F.343 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.237, A:R.237, A:N.244, A:N.341 Water bridges: A:A.292 GOL.5: 8 residues within 4Å: Chain B: R.237, F.240, N.244, N.289, S.291, A.292, N.341, F.343 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.237, B:R.237, B:N.244, B:N.341 Water bridges: B:A.292 GOL.9: 8 residues within 4Å: Chain C: R.237, F.240, N.244, N.289, S.291, A.292, N.341, F.343 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.237, C:R.237, C:N.244, C:N.341 Water bridges: C:A.292

9 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: R.254, E.377, R.378, V.379 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.377, B:E.377 ZN.3: 3 residues within 4Å: Chain A: D.133, H.303, K.338 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.133, A:H.303, H2O.2, H2O.10 ZN.4: 3 residues within 4Å: Chain A: E.16, S.20, H.137 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.16, A:S.20 ZN.6: 4 residues within 4Å: Chain C: R.254, E.377, R.378, V.379 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.377, C:E.377 ZN.7: 3 residues within 4Å: Chain B: D.133, H.303, K.338 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.133, B:H.303, H2O.16, H2O.24 ZN.8: 3 residues within 4Å: Chain B: E.16, S.20, H.137 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.16, B:S.20 ZN.10: 4 residues within 4Å: Chain A: R.254, E.377, R.378, V.379 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.377, A:E.377 ZN.11: 3 residues within 4Å: Chain C: D.133, H.303, K.338 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.133, C:H.303, H2O.30, H2O.38 ZN.12: 3 residues within 4Å: Chain C: E.16, S.20, H.137 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.16, C:S.20

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Farenc, C. et al., A Virulent Siphophage CyoEM Structure and Host Recognition and Infection Mechanism. To be Published

Release Date

2014-04-30

Peptides

Receptor Binding Protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Receptor Binding Protein

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