SMTL ID : 4k20.1

Crystal structure of Canavalia boliviana lectin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: E.8, D.10, D.19, H.24, S.34 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.8, A:D.10, A:D.19, A:H.24 MN.3: 5 residues within 4Å: Chain B: E.8, D.10, D.19, H.24, S.34 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.8, B:D.10, B:D.19, B:H.24 MN.5: 5 residues within 4Å: Chain C: E.8, D.10, D.19, H.24, S.34 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.8, C:D.10, C:D.19, C:H.24 MN.7: 5 residues within 4Å: Chain D: E.8, D.10, D.19, H.24, S.34 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.8, D:D.10, D:D.19, D:H.24

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.10, Y.12, N.14, D.19, D.208, R.228 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.10, A:D.10, A:Y.12 CA.4: 6 residues within 4Å: Chain B: D.10, Y.12, N.14, D.19, D.208, R.228 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.10, B:D.10 CA.6: 6 residues within 4Å: Chain C: D.10, Y.12, N.14, D.19, D.208, R.228 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.10, C:D.10, C:Y.12 CA.8: 6 residues within 4Å: Chain D: D.10, Y.12, N.14, D.19, D.208, R.228 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.10, D:D.10

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Bezerra, G.A. et al., Structural Studies of an Anti-Inflammatory Lectin from Canavalia boliviana Seeds in Complex with Dimannosides. Plos One (2014)

Release Date

2014-04-09

Peptides

Canavalia boliviana lectin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Canavalia boliviana lectin

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