SMTL ID : 4h3o.1

Crystal structure of a new form of lectin from Allium sativum at 2.17 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-dimer

Ligands

7 x CD: CADMIUM ION(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: E.46 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.46 CD.2: 3 residues within 4Å: Chain A: D.5, E.8 Chain B: D.91 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.5, A:E.8, H2O.102, H2O.183 CD.3: 1 residues within 4Å: Chain B: E.46 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.46, B:E.46, H2O.178 CD.4: 2 residues within 4Å: Chain B: E.19, H.22 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.19, B:E.19, B:H.22, H2O.191 CD.5: 2 residues within 4Å: Chain B: N.7, S.59 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.59, H2O.156 CD.6: 1 residues within 4Å: Chain B: N.7 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:N.7, H2O.103 CD.7: 2 residues within 4Å: Chain B: D.35, H.36 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.35, H2O.189, H2O.192

1 x NA: SODIUM ION(Non-functional Binders)

NA.8: 2 residues within 4Å: Chain B: D.5, E.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.8

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, S. et al., Crystal structure of a new form of lectin from Allium sativum at 2.17 A resolution. To be Published

Release Date

2012-09-26

Peptides

Lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lectin