SMTL ID : 4gky.1

Crystal structure of a carbohydrate-binding domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.143, F.145, N.147, H.169, D.172 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.143, A:F.145, A:D.172, H2O.2, H2O.2 CA.2: 5 residues within 4Å: Chain A: D.146, D.148, N.152, N.153, D.172 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.146, A:D.148, A:D.148, A:D.172, H2O.2

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.3: 8 residues within 4Å: Chain A: A.111, D.112, F.145, N.147, H.169, G.242, G.243, L.244 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.112, A:N.147, A:G.242, A:G.243, A:L.244, A:L.244

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: T.88, K.89, A.91, Q.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.88 Water bridges: A:A.91 GOL.5: 4 residues within 4Å: Chain A: I.228, I.229, P.230, A.231 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.231

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, C. et al., Structural Characterization of Carbohydrate Binding by LMAN1 Protein Provides New Insight into the Endoplasmic Reticulum Export of Factors V (FV) and VIII (FVIII). J.Biol.Chem. (2013)

Release Date

2013-06-05

Peptides

Protein ERGIC-53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein ERGIC-53

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