SMTL ID : 4fbv.1

Crystal structure of the Myxococcus Xanthus hemagglutinin in complex with a3,a6-mannopentaose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose

BMA-MAN-MAN-MAN.1: 10 residues within 4Å: Chain A: Q.143, W.144, G.145, G.146, R.229, E.257, G.258, P.259, I.260 Ligands: MAN.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.144, A:R.229, A:R.229

1 x BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose(Non-covalent)

BMA-MAN-MAN-MAN-MAN.2: 10 residues within 4Å: Chain A: R.162, E.190, G.191, P.192, I.193, Q.210, W.211, G.212, G.213 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.162, A:R.162, A:W.211, A:R.162 Water bridges: A:R.162

1 x MAN: alpha-D-mannopyranose

MAN.3: 3 residues within 4Å: Chain A: W.144, R.229 Ligands: BMA-MAN-MAN-MAN.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.229

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: R.196, G.197, T.198, T.206, E.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.198 Water bridges: A:R.196 EDO.5: 5 residues within 4Å: Chain A: T.184, P.192, I.193, G.194 Ligands: BMA-MAN-MAN-MAN-MAN.2 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.194, A:F.195, A:Q.210 EDO.6: 6 residues within 4Å: Chain A: G.177, K.179, G.231, Q.232, N.233, N.255 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.179, A:K.179, A:N.233, A:N.255 Water bridges: A:G.231 EDO.7: 6 residues within 4Å: Chain A: P.19, G.21, T.200, S.201, T.204, F.223 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.21, A:S.201

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Koharudin, L.M. et al., Structural Insights into the Anti-HIV Activity of the Oscillatoria agardhii Agglutinin Homolog Lectin Family. J.Biol.Chem. (2012)

Release Date

2012-08-15

Peptides

Myxobacterial hemagglutinin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myxobacterial hemagglutinin

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