SMTL ID : 4d63.1

Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre, avirulent form complexed with 6-sialyllactose.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

3 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)

SIA.1: 10 residues within 4Å: Chain A: E.125, T.152, V.153, K.154, N.155, G.156 Chain B: I.84, G.85, V.86, M.87 11 PLIP interactions: 8 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:E.125, A:V.153, A:K.154, A:N.155, A:N.155, A:G.156, B:M.87 Water bridges: A:T.152 Salt bridges: A:K.154 Hydrophobic interactions: B:I.84, B:V.86 SIA.2: 10 residues within 4Å: Chain B: E.125, T.152, V.153, K.154, N.155, G.156 Chain C: I.84, G.85, V.86, M.87 11 PLIP interactions: 3 interactions with chain C, 8 interactions with chain B Hydrophobic interactions: C:I.84, C:V.86 Hydrogen bonds: C:M.87, B:E.125, B:V.153, B:K.154, B:N.155, B:N.155, B:G.156 Water bridges: B:T.152 Salt bridges: B:K.154 SIA.3: 10 residues within 4Å: Chain A: I.84, G.85, V.86, M.87 Chain C: E.125, T.152, V.153, K.154, N.155, G.156 10 PLIP interactions: 7 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:V.153, C:K.154, C:N.155, C:N.155, C:G.156, A:M.87 Water bridges: C:T.152 Salt bridges: C:K.154 Hydrophobic interactions: A:I.84, A:V.86

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A.K. et al., Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3. PLoS ONE (2015)

Release Date

2015-10-14

Peptides

FIBER KNOB DOMAIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

FIBER KNOB DOMAIN

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