- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)(Post Translational Modification)
NAG.4: 1 residues within 4Å:- Chain A: N.13
4 PLIP interactions:4 interactions with chain A- Water bridges: A:N.13, A:N.13, A:N.13, A:N.13
NAG.5: 1 residues within 4Å:- Chain A: N.25
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.17
NAG.6: 5 residues within 4Å:- Chain A: N.166, N.237, D.238, A.239
- Chain E: S.218
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:A.239
- Hydrogen bonds: A:N.166, A:N.237, A:N.237
NAG.9: 2 residues within 4Å:- Chain C: Q.17, N.25
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Q.17
NAG.10: 5 residues within 4Å:- Chain A: S.218
- Chain C: N.166, N.237, D.238, A.239
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:A.239
- Hydrogen bonds: C:N.237
NAG.13: 1 residues within 4Å:- Chain E: N.13
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.13
- Water bridges: E:N.13
NAG.14: 2 residues within 4Å:- Chain E: Q.17, N.25
No protein-ligand interaction detected (PLIP)NAG.15: 5 residues within 4Å:- Chain C: S.218
- Chain E: N.166, N.237, D.238, A.239
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:A.239
- Hydrogen bonds: E:N.166, E:N.237
NAG.16: 1 residues within 4Å:- Chain E: N.287
No protein-ligand interaction detected (PLIP)- 5 x PO4: PHOSPHATE ION(Post Translational Modification)(Non-functional Binders)
PO4.7: 5 residues within 4Å:- Chain A: S.123, W.124, S.125, D.126, H.127
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.125, A:D.126, A:H.127, A:R.163
- Salt bridges: A:H.127
PO4.8: 5 residues within 4Å:- Chain A: A.60, D.90, N.96, F.97, Y.100
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.90, A:F.97
PO4.11: 6 residues within 4Å:- Chain C: S.123, W.124, S.125, D.126, H.127, R.163
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:S.125, C:D.126, C:H.127
- Salt bridges: C:H.127, C:R.163
PO4.12: 6 residues within 4Å:- Chain C: A.60, D.90, L.91, N.96, F.97, Y.100
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:F.97, C:Y.100
PO4.17: 5 residues within 4Å:- Chain E: L.35, E.36, K.37, T.38, M.290
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:E.36, E:K.37, E:T.38
- Salt bridges: E:K.37
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Xiong, X. et al., Enhanced Human Receptor Binding by H5 Haemagglutinins. Virology (2014)
- Release Date
- 2014-05-28
- Peptides
- HAEMAGGLUTININ HA1: ACE
HAEMAGGLUTININ HA2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EB
BD
DF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)(Post Translational Modification)
- 5 x PO4: PHOSPHATE ION(Post Translational Modification)(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Xiong, X. et al., Enhanced Human Receptor Binding by H5 Haemagglutinins. Virology (2014)
- Release Date
- 2014-05-28
- Peptides
- HAEMAGGLUTININ HA1: ACE
HAEMAGGLUTININ HA2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EB
BD
DF
F