SMTL ID : 4bh2.1

Crystal Structure of the Haemagglutinin from a Transmissible Mutant H5 Influenza Virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA- BMA- MAN: beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-BMA-MAN.1: 5 residues within 4Å: Chain A: N.167, N.238, D.239, A.240 Chain E: S.219 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-BMA-MAN.5: 5 residues within 4Å: Chain A: S.219 Chain C: N.167, N.238, D.239, A.240 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-BMA-MAN.9: 5 residues within 4Å: Chain C: S.219 Chain E: N.167, N.238, D.239, A.240 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.13 No protein-ligand interaction detected (PLIP) NAG.3: 1 residues within 4Å: Chain A: N.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.25 NAG.6: 1 residues within 4Å: Chain C: N.13 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Chain C: N.25 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.25 NAG.10: 1 residues within 4Å: Chain E: N.13 No protein-ligand interaction detected (PLIP) NAG.11: 1 residues within 4Å: Chain E: N.25 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.25

3 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 6 residues within 4Å: Chain A: C.6 Chain B: W.14, H.25, Y.34, N.135, C.137 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.14, B:N.135 Salt bridges: B:H.25 EPE.8: 6 residues within 4Å: Chain C: C.6 Chain D: W.14, H.25, Y.34, N.135, C.137 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:W.14, D:N.135 Salt bridges: D:H.25 EPE.12: 6 residues within 4Å: Chain E: C.6 Chain F: W.14, H.25, Y.34, N.135, C.137 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:W.14, F:N.135 Salt bridges: F:H.25

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Xiong, X. et al., Receptor Binding by a Ferret-Transmissible H5 Avian Influenza Virus. Nature (2013)

Release Date

2013-04-24

Peptides

HEMAGGLUTININ: ACE
HEMAGGLUTININ: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HEMAGGLUTININ

HEMAGGLUTININ

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