SMTL ID : 4bgz.1

Crystal Structure of H5 (tyTy) Influenza Virus Haemagglutinin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

hetero-3-3-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.166, N.237, D.238, A.239 Chain C: S.218 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.239 Hydrogen bonds: A:N.166, A:N.237 NAG.4: 4 residues within 4Å: Chain C: N.166, N.237, A.239 Chain E: S.218 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:A.239 Hydrogen bonds: C:N.166, C:N.237 NAG.5: 3 residues within 4Å: Chain C: Q.16, N.24, R.311 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.16, C:R.311 NAG.6: 5 residues within 4Å: Chain A: S.218 Chain E: N.166, N.237, D.238, A.239 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:A.239 Hydrogen bonds: E:N.237

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: S.133, S.134, S.142, Q.223 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.134, A:S.134, A:S.142, A:S.142, A:Q.223 Water bridges: A:S.133, A:Q.223 PO4.3: 6 residues within 4Å: Chain A: S.122, W.123, S.124, D.125, H.126, R.163 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.124, A:D.125, A:H.126 Salt bridges: A:H.126, A:R.163 PO4.7: 3 residues within 4Å: Chain E: S.133, S.134, Q.223 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:S.134, E:S.134, E:S.134, E:S.142, E:Q.223 PO4.8: 2 residues within 4Å: Chain F: N.129, H.142 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:N.129, F:N.129 Salt bridges: F:H.142

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Xiong, X. et al., Receptor Binding by a Ferret-Transmissible H5 Avian Influenza Virus. Nature (2013)

Release Date

2013-04-24

Peptides

HEMAGGLUTININ: ACE
HAEMAGGLUTININ HA1: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

HEMAGGLUTININ

HAEMAGGLUTININ HA1

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