- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x GYU: 2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-alpha-D-glucopyranose(Non-covalent)
GYU.1: 7 residues within 4Å:- Chain A: S.62, Y.64, Y.66, E.72, Y.73
- Chain B: S.114, E.115
12 PLIP interactions:7 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:E.72, A:E.72, A:Y.73
- Hydrogen bonds: A:S.62, A:Y.73, B:S.114, B:E.115, B:E.115, B:E.115
- Water bridges: A:S.43, A:Y.73, B:S.114
GYU.2: 8 residues within 4Å:- Chain A: D.86, S.105, W.107, F.109, E.115, F.116
- Chain B: A.71, E.72
10 PLIP interactions:6 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:W.107, A:E.115, A:F.116
- Hydrogen bonds: A:D.86, A:S.105, A:F.109, B:A.71, B:E.72, B:E.72
- Water bridges: B:R.84
GYU.4: 7 residues within 4Å:- Chain A: S.114, E.115
- Chain B: S.62, Y.64, Y.66, E.72, Y.73
11 PLIP interactions:7 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:Y.64, B:E.72, B:Y.73
- Hydrogen bonds: B:S.62, B:Y.73, B:Y.73, A:S.114, A:E.115, A:E.115
- Water bridges: B:S.43, A:S.114
GYU.5: 8 residues within 4Å:- Chain A: A.71, E.72
- Chain B: D.86, S.105, W.107, F.109, E.115, F.116
10 PLIP interactions:6 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:W.107, B:W.107, B:E.115, B:F.116
- Hydrogen bonds: B:D.86, B:S.105, A:A.71, A:E.72, A:E.72
- Water bridges: A:R.84
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 10 residues within 4Å:- Chain A: G.124, A.125, C.126, D.129, Y.145, C.153, G.154
- Chain B: M.26, G.27, W.41
7 PLIP interactions:1 interactions with chain B, 6 interactions with chain A- Water bridges: B:G.27, A:C.153, A:C.153
- Hydrogen bonds: A:A.125, A:D.129, A:D.129, A:C.153
GOL.6: 8 residues within 4Å:- Chain A: M.26, W.41
- Chain B: G.124, A.125, C.126, D.129, Y.145, C.153
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:A.125, B:D.129
- Water bridges: B:T.128, B:T.128
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Schwefel, D. et al., Structural Basis of Multivalent Binding to Wheat Germ Agglutinin. J.Am.Chem.Soc. (2010)
- Release Date
- 2012-04-04
- Peptides
- AGGLUTININ ISOLECTIN 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x GYU: 2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-alpha-D-glucopyranose(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Schwefel, D. et al., Structural Basis of Multivalent Binding to Wheat Germ Agglutinin. J.Am.Chem.Soc. (2010)
- Release Date
- 2012-04-04
- Peptides
- AGGLUTININ ISOLECTIN 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B