SMTL ID : 3s7x.1

Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-pentamer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain B: K.28 Chain C: S.164 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: S.164 Chain E: K.28 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: K.28 Chain B: S.164 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain C: K.28 Chain D: S.163, S.164, S.165 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain D: K.28 Chain E: S.164 Ligand excluded by PLIP

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain B: L.108, T.109, K.245 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.109 GOL.3: 3 residues within 4Å: Chain C: L.108, T.109, K.245 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.109, C:K.245 GOL.4: 3 residues within 4Å: Chain D: L.108, T.109, K.245 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.109, D:K.245 GOL.5: 3 residues within 4Å: Chain E: L.108, T.109, K.245 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.109, E:K.245 GOL.6: 4 residues within 4Å: Chain A: L.108, T.109, K.245, N.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.109, A:K.245, A:K.245

5 x NA: SODIUM ION(Non-functional Binders)

NA.11: 2 residues within 4Å: Chain E: E.96, S.211 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:E.96, E:S.211, E:S.214 NA.12: 3 residues within 4Å: Chain A: E.96, S.211, S.214 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.211, A:S.211, A:S.214 NA.13: 2 residues within 4Å: Chain B: E.96, S.211 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.211 NA.14: 2 residues within 4Å: Chain C: E.96, S.211 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.209 NA.15: 2 residues within 4Å: Chain D: E.96, S.211 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.211, D:S.214, D:S.214

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Neu, U. et al., Structures of the major capsid proteins of the human KI and WU polyomaviruses. J.Virol. (2011)

Release Date

2011-06-29

Peptides

Major capsid protein VP1: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Major capsid protein VP1