SMTL ID : 3qdu.1 (2 other biounits)

Structure of Boletus edulis lectin in complex with N,N-diacetyl chitobiose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 9 residues within 4Å: Chain A: D.79, V.80, V.81, T.82, R.103, Y.105, T.106, Y.114, V.116 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.116 Hydrogen bonds: A:T.82, A:R.103, A:T.106, A:T.106, A:Y.114, A:Y.114 NAG-NAG.2: 10 residues within 4Å: Chain B: D.79, V.80, V.81, T.82, E.88, R.103, Y.105, T.106, Y.114, V.116 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.116 Hydrogen bonds: B:T.82, B:R.103, B:Y.114 NAG-NAG.3: 10 residues within 4Å: Chain C: D.79, V.80, V.81, T.82, E.88, R.103, Y.105, T.106, Y.114, V.116 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:V.116 Hydrogen bonds: C:T.82, C:R.103, C:T.106, C:Y.114 Water bridges: C:Y.114 NAG-NAG.4: 10 residues within 4Å: Chain D: D.79, V.80, V.81, T.82, E.88, R.103, Y.105, T.106, Y.114, V.116 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:V.116 Hydrogen bonds: D:T.82, D:Y.97, D:R.103, D:Y.114, D:Y.114 Water bridges: D:Y.105

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Bovi, M. et al., Structure of a lectin with antitumoral properties in king bolete (Boletus edulis) mushrooms. Glycobiology (2011)

Release Date

2011-02-23

Peptides

BOLETUS EDULIS LECTIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

BOLETUS EDULIS LECTIN

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