SMTL ID : 3qc5.1

GspB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 5 residues within 4Å: Chain A: D.155, E.157, D.183, N.184, D.246 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.155, A:D.155, A:E.157, A:D.183, A:D.246

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: N.162, V.163, P.164 5 PLIP interactions: 5 interactions with chain A Water bridges: A:N.162, A:N.162, A:V.163, A:S.165, A:F.178 GOL.3: 3 residues within 4Å: Chain A: N.103, D.104, T.105 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.104, A:D.104, A:T.105, A:T.105 Water bridges: A:N.103 GOL.4: 1 residues within 4Å: Chain A: E.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.157

1 x HDZ: NITROGEN MOLECULE(Non-covalent)

HDZ.5: 4 residues within 4Å: Chain A: W.197, R.205, Y.238, R.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.240, A:R.240

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 2 residues within 4Å: Chain A: F.188, L.190 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.188 Water bridges: A:F.188, A:F.188, A:L.190

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Pyburn, T.M. et al., A Structural Model for Binding of the Serine-Rich Repeat Adhesin GspB to Host Carbohydrate Receptors. Plos Pathog. (2011)

Release Date

2011-08-10

Peptides

Platelet binding protein GspB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Platelet binding protein GspB

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