SMTL ID : 3p5i.1 (3 other biounits)

Structure of the carbohydrate-recognition domain of human Langerin with 6-SO4-Gal-GlcNAc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NAG- G6S: 6-O-sulfo-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-G6S.1: 13 residues within 4Å: Chain A: I.58, E.93, N.95, A.97, E.101, N.105, K.107, N.115, D.116, A.117, K.121, F.123 Ligands: CA.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.95, A:N.105, A:N.105, A:N.115, A:N.115 Water bridges: A:E.101, A:E.101 Salt bridges: A:K.107, A:K.121

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.93, N.95, E.101, N.115, D.116 Ligands: NAG-G6S.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.93, A:E.101, A:D.116, A:D.116

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Structural Basis for Langerin Recognition of Diverse Pathogen and Mammalian Glycans through a Single Binding Site. J.Mol.Biol. (2011)

Release Date

2010-12-08

Peptides

C-type lectin domain family 4 member K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C-type lectin domain family 4 member K

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