SMTL ID : 3nv3.1

Crystal structure of human galectin-9 C-terminal CRD in complex with biantennary oligosaccharide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x MAN- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)

MAN-NAG-GAL.1: 7 residues within 4Å: Chain A: H.50, N.52, R.54, N.63, W.70, E.73, R.75 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.54, A:N.63, A:E.73, A:R.54, A:R.54, A:R.75 Water bridges: A:R.36, A:N.52, A:N.52, A:E.57

1 x NI: NICKEL (II) ION

NI.2: 1 residues within 4Å: Chain A: H.135 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.135, H2O.1

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., X-ray structures of human galectin-9 C-terminal domain in complexes with a biantennary oligosaccharide and sialyllactose. J.Biol.Chem. (2010)

Release Date

2010-09-22

Peptides

Galectin 9 short isoform variant: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin 9 short isoform variant

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