SMTL ID : 3m6s.1 (1 other biounit)

Crystal structure of H1N1pdm Hemagglutinin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain C: N.68, E.70, D.90, N.91, C.94, P.141, R.225 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 7 residues within 4Å: Chain A: N.68, E.70, N.91, C.94, C.140, P.141, R.225 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.70 Hydrogen bonds: A:N.68, A:E.70, A:N.91, A:R.225, A:R.225 NAG.3: 6 residues within 4Å: Chain E: N.68, D.90, N.91, C.94, P.141, R.225 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:N.68, E:D.90, E:N.91, E:R.225, E:R.225

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structure and Receptor binding properties of a pandemic H1N1 virus hemagglutinin. PLoS Curr (2010)

Release Date

2010-03-31

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin

Hemagglutinin

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