SMTL ID : 3ffo.1

F17b-G lectin domain with bound GlcNAc(beta1-2)man

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x BMA- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose(Non-covalent)

BMA-NAG.1: 8 residues within 4Å: Chain A: A.43, D.88, T.89, W.109, S.116, T.117, Q.118, G.119 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.116, A:S.116, A:A.43, A:T.89, A:T.89, A:T.117, A:G.119

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 1 residues within 4Å: Chain A: H.23 No protein-ligand interaction detected (PLIP)

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 2 residues within 4Å: Chain A: I.5, R.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.47, A:R.47

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: S.7, Y.40, N.42 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.7, A:Y.40 Water bridges: A:S.7, A:Y.40, A:N.42, A:N.42 SO4.5: 3 residues within 4Å: Chain A: Q.161, T.162, T.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.162, A:T.163

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Lonardi, E. et al., Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli. Biology (Basel) (2013)

Release Date

2009-12-22

Peptides

Adhesin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adhesin

Related Entries With Identical Sequence