SMTL ID : 2viu.1

INFLUENZA VIRUS HEMAGGLUTININ

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: N.165, T.167, V.242, V.244 Chain E: S.219, P.221, W.222 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:W.222 Hydrophobic interactions: A:V.242 NAG-NAG-BMA.7: 7 residues within 4Å: Chain A: S.219, P.221, W.222 Chain C: N.165, T.167, V.242, V.244 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:W.222 Hydrophobic interactions: C:V.242 NAG-NAG-BMA.13: 7 residues within 4Å: Chain C: S.219, P.221, W.222 Chain E: N.165, T.167, V.242, V.244 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:W.222 Hydrophobic interactions: E:V.242

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.2: 3 residues within 4Å: Chain A: N.38, T.318 Chain B: L.52 Ligand excluded by PLIP NAG.3: 5 residues within 4Å: Chain A: Q.80, N.81, F.120, I.121 Ligands: NAG.4 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: I.121 Ligands: NAG.3 Ligand excluded by PLIP NAG.5: 4 residues within 4Å: Chain A: S.45, N.285, V.297, N.298 Ligand excluded by PLIP NAG.6: 5 residues within 4Å: Chain B: A.147, E.150, S.151, N.154, T.156 Ligand excluded by PLIP NAG.8: 3 residues within 4Å: Chain C: N.38, T.318 Chain D: L.52 Ligand excluded by PLIP NAG.9: 5 residues within 4Å: Chain C: Q.80, N.81, F.120, I.121 Ligands: NAG.10 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain C: I.121 Ligands: NAG.9 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain C: S.45, N.285, V.297, N.298 Ligand excluded by PLIP NAG.12: 5 residues within 4Å: Chain D: A.147, E.150, S.151, N.154, T.156 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain E: N.38, T.318 Chain F: L.52 Ligand excluded by PLIP NAG.15: 5 residues within 4Å: Chain E: Q.80, N.81, F.120, I.121 Ligands: NAG.16 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain E: I.121 Ligands: NAG.15 Ligand excluded by PLIP NAG.17: 4 residues within 4Å: Chain E: S.45, N.285, V.297, N.298 Ligand excluded by PLIP NAG.18: 5 residues within 4Å: Chain F: A.147, E.150, S.151, N.154, T.156 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Fleury, D. et al., Antigen distortion allows influenza virus to escape neutralization. Nat.Struct.Biol. (1998)

Release Date

1998-04-29

Peptides

HEMAGGLUTININ: ACE
HEMAGGLUTININ: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HEMAGGLUTININ

HEMAGGLUTININ

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