SMTL ID : 2obt.1

Crystal Structures of P Domain of Norovirus VA387 in Complex with Blood Group Trisaccharides type B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x GAL- FUC- GLA: alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose(Non-covalent)

GAL-FUC-GLA.1: 8 residues within 4Å: Chain A: S.131, T.132, R.133, H.135, D.162 Chain B: S.229, G.230, Y.231 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.231 Hydrogen bonds: B:G.230, A:R.133, A:R.133, A:D.162, B:S.229, B:S.229 GAL-FUC-GLA.2: 8 residues within 4Å: Chain A: S.229, G.230, Y.231 Chain B: S.131, T.132, R.133, H.135, D.162 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.133, B:R.133, B:D.162, A:G.230, A:S.229, A:S.229 Hydrophobic interactions: A:Y.231

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Cao, S. et al., Structural Basis for the Recognition of Blood Group Trisaccharides by Norovirus. J.Virol. (2007)

Release Date

2007-04-24

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Capsid protein

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