SMTL ID : 2obs.1

Crystal Structures of P Domain of Norovirus VA387 in Complex with Blood Group Trisaccharides type A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x GL0- FUC- A2G: alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-gulopyranose(Non-covalent)(Non-functional Binders)

GL0-FUC-A2G.1: 8 residues within 4Å: Chain A: S.131, T.132, R.133, H.135, N.161, D.162 Chain B: G.230, Y.231 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.161, A:D.162, A:R.133, A:R.133, A:D.162, B:G.230, B:G.230 Water bridges: A:A.134, A:Q.164, B:S.229 Hydrophobic interactions: B:Y.231 GL0-FUC-A2G.2: 8 residues within 4Å: Chain A: G.230, Y.231 Chain B: S.131, T.132, R.133, H.135, N.161, D.162 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.161, B:R.133, B:R.133, B:D.162, A:G.230, A:G.230 Water bridges: B:A.134, B:Q.164, A:S.229 Hydrophobic interactions: A:Y.231

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Cao, S. et al., Structural Basis for the Recognition of Blood Group Trisaccharides by Norovirus. J.Virol. (2007)

Release Date

2007-04-24

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Capsid protein

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