SMTL ID : 2j60.1 (2 other biounits)

H-ficolin complexed to D-fucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ABE: alpha-D-Abequopyranose(Non-covalent)

ABE.1: 5 residues within 4Å: Chain A: S.179, C.180, Y.181, Y.199, V.209 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.180, A:Y.181, A:Y.181, A:Y.181, A:Y.199

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.159, D.161, S.163, S.165 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.161, A:S.163, A:S.165, H2O.3, H2O.3

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: E.88, H.91, G.124, E.125, V.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.125 Water bridges: A:E.125 Salt bridges: A:H.91

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Garlatti, V. et al., Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins. Embo J. (2007)

Release Date

2007-01-23

Peptides

FICOLIN-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FICOLIN-3

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