- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x BGC- GLC: alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)(Non-covalent)
SO4.7: 2 residues within 4Å:- Chain A: N.94, T.95
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:N.94, A:T.95, A:T.95
- Water bridges: A:A.93, B:R.6, B:R.6
SO4.8: 4 residues within 4Å:- Chain A: R.65, G.91, S.92, A.93
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.91, A:A.93
- Salt bridges: A:R.65
SO4.13: 4 residues within 4Å:- Chain B: R.65, G.91, S.92, A.93
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.93, B:A.93
- Salt bridges: B:R.65
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)(Non-covalent)
EDO.11: 10 residues within 4Å:- Chain A: G.18, L.19, I.35, D.36, Q.103
- Chain B: G.18, L.19, I.35, D.36, Q.103
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.103, B:Q.103
EDO.12: 4 residues within 4Å:- Chain A: T.50, F.51, T.52, R.81
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.52, A:T.52
EDO.14: 4 residues within 4Å:- Chain B: S.60, N.61, T.77, N.78
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.60, B:N.61, B:N.78
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Ziolkowska, N.E. et al., Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin. Proteins (2007)
- Release Date
- 2007-04-24
- Peptides
- Griffithsin: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x BGC- GLC: alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Ziolkowska, N.E. et al., Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin. Proteins (2007)
- Release Date
- 2007-04-24
- Peptides
- Griffithsin: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B