SMTL ID : 2e6v.1 (4 other biounits)

Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+/Man3GlcNAc-bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose

BMA-MAN-MAN.1: 8 residues within 4Å: Chain A: D.83, Y.116, N.118, E.120, H.142, G.212, D.213, L.214 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.213, A:N.118, A:H.142, A:G.212, A:D.213, A:L.214, A:L.214

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.114, Y.116, N.118, D.145 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.114, A:Y.116, A:D.145, H2O.1, H2O.1

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Satoh, T. et al., Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36. J.Biol.Chem. (2007)

Release Date

2007-07-24

Peptides

Vesicular integral-membrane protein VIP36: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vesicular integral-membrane protein VIP36

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