SMTL ID : 2d24.1 (1 other biounit)

Crystal structure of ES complex of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x XYS- XYS- XYS- XYS- XYS: alpha-D-xylopyranose-(1-4)-alpha-D-xylopyranose-(1-4)-alpha-D-xylopyranose-(1-4)-alpha-D-xylopyranose-(1-4)-alpha-D-xylopyranose

XYS-XYS-XYS-XYS-XYS.1: 19 residues within 4Å: Chain A: E.44, N.45, K.48, H.81, W.85, Q.88, H.128, D.132, Y.172, N.173, Q.205, H.207, N.209, G.211, S.212, E.236, W.266, W.274, R.275 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.44, A:N.45, A:K.48, A:W.266 Water bridges: A:N.45, A:W.274

1 x XYS- XYS- XYS- XYS: alpha-D-xylopyranose-(1-4)-alpha-D-xylopyranose-(1-4)-alpha-D-xylopyranose-(1-4)-alpha-D-xylopyranose

XYS-XYS-XYS-XYS.2: 10 residues within 4Å: Chain A: D.408, A.409, V.410, G.411, G.412, Q.421, Y.423, C.425, S.426, N.430 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.425

1 x XYS- XYS: alpha-D-xylopyranose-(1-4)-alpha-D-xylopyranose(Non-covalent)

XYS-XYS.3: 8 residues within 4Å: Chain A: D.325, V.326, P.327, N.328, Q.338, Y.340, H.343, N.347 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.328, A:Q.338

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: R.322 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.322 SO4.5: 2 residues within 4Å: Chain A: K.289, R.391 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.289, A:R.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, R. et al., Crystallographic snapshots of an entire reaction cycle for a retaining xylanase from Streptomyces olivaceoviridis E-86. J.Biochem. (2009)

Release Date

2006-10-10

Peptides

ENDO-1,4-BETA-D-XYLANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-1,4-BETA-D-XYLANASE

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