SMTL ID : 2d1z.1 (1 other biounit)

Crystal structure of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: S.131, D.132, R.139, D.140 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.132, A:D.132, A:D.132, A:D.140 GOL.3: 6 residues within 4Å: Chain A: Y.172, N.173, H.207, N.209, W.274, R.275 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.207, A:N.209, A:R.275, A:R.275 GOL.4: 5 residues within 4Å: Chain A: A.355, E.357, R.359, W.383, G.384 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.357, A:R.359 Water bridges: A:E.357, A:W.383 GOL.5: 8 residues within 4Å: Chain A: D.408, A.409, V.410, G.411, G.412, Q.421, Y.423, N.430 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.408, A:G.411, A:G.412, A:Q.421, A:N.430 Water bridges: A:S.426 GOL.6: 8 residues within 4Å: Chain A: D.325, V.326, P.327, N.328, Q.338, Y.340, H.343, N.347 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.328, A:N.328, A:Q.338, A:H.343, A:N.347

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, R. et al., Crystallographic snapshots of an entire reaction cycle for a retaining xylanase from Streptomyces olivaceoviridis E-86. J.Biochem. (2009)

Release Date

2006-10-10

Peptides

ENDO-1,4-BETA-D-XYLANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-1,4-BETA-D-XYLANASE

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