SMTL ID : 2brs.1 (1 other biounit)

EMBP Heparin complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x SGN- IDU: 2-O-sulfo-beta-L-altropyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose(Non-functional Binders)

SGN-IDU.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: G.90, H.91, A.105, H.106, C.107 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.91, A:C.107 Water bridges: A:G.90, A:G.90, A:L.108, A:L.108 Salt bridges: A:H.91, A:H.106 SO4.3: 4 residues within 4Å: Chain A: R.65, R.88, H.91, R.104 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.88, A:R.88 Water bridges: A:R.104, A:R.104, A:R.104, A:R.104, A:R.104, A:R.104 Salt bridges: A:R.65, A:H.91, A:R.104 SO4.4: 6 residues within 4Å: Chain A: G.89, R.103, R.104, A.105, H.106, R.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.106 Salt bridges: A:R.103, A:H.106, A:R.109 SO4.5: 4 residues within 4Å: Chain A: Q.84, P.85, W.86, S.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.86, A:S.87 SO4.6: 2 residues within 4Å: Chain A: L.10, R.110 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swaminathan, G.J. et al., Eosinophil-Granule Major Basic Protein, a C-Type Lectin, Binds Heparin. Biochemistry (2005)

Release Date

2005-10-26

Peptides

EOSINOPHIL-GRANULE MAJOR BASIC PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EOSINOPHIL-GRANULE MAJOR BASIC PROTEIN

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