SMTL ID : 1xxr.1

Structure of a mannose-specific jacalin-related lectin from Morus Nigra in complex with mannose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

3 x ACY: ACETIC ACID(Non-covalent)(Non-functional Binders)

ACY.1: 3 residues within 4Å: Chain A: N.28, A.29, R.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.29 Salt bridges: A:R.147 ACY.6: 3 residues within 4Å: Chain C: N.28, A.29, R.147 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.29 Salt bridges: C:R.147 ACY.8: 3 residues within 4Å: Chain D: N.28, A.29, R.147 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.29 Salt bridges: D:R.147

1 x GOL: GLYCEROL(Non-covalent)

GOL.2: 7 residues within 4Å: Chain A: G.26, G.27, L.102, G.149, F.150, V.151, D.153 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.27, A:G.149, A:F.150, A:V.151, A:D.153

3 x MAN: alpha-D-mannopyranose(Non-covalent)(Non-functional Binders)

MAN.3: 8 residues within 4Å: Chain B: G.26, G.27, L.102, T.104, G.149, F.150, V.151, D.153 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.27, B:G.149, B:F.150, B:V.151, B:V.151 Water bridges: B:G.26 MAN.5: 7 residues within 4Å: Chain C: G.26, G.27, L.102, G.149, F.150, V.151, D.153 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.27, C:G.149, C:F.150, C:V.151, C:V.151 Water bridges: C:G.26 MAN.7: 7 residues within 4Å: Chain D: G.26, G.27, L.102, G.149, F.150, V.151, D.153 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.27, D:G.149, D:F.150, D:V.151, D:V.151 Water bridges: D:G.26

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain B: G.27, N.28, A.29, R.147 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.29 Water bridges: B:R.147, B:R.147 Salt bridges: B:R.147

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Rabijns, A. et al., Structural analysis of the jacalin-related lectin MornigaM from the black mulberry (Morus nigra) in complex with mannose. Febs J. (2005)

Release Date

2005-10-25

Peptides

mannose-binding lectin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

mannose-binding lectin

Related Entries With Identical Sequence