SMTL ID : 1xxq.1

Structure of a mannose-specific jacalin-related lectin from Morus nigra

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain B: G.27, N.28, A.29, R.147 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.29, B:R.147 Water bridges: B:R.147

3 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 3 residues within 4Å: Chain C: N.28, A.29, R.147 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.29 Salt bridges: C:R.147 ACY.3: 3 residues within 4Å: Chain D: N.28, A.29, R.147 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.29 Salt bridges: D:R.147 ACY.4: 3 residues within 4Å: Chain A: N.28, A.29, R.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.29 Salt bridges: A:R.147

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain B: G.26, G.27, L.102, G.149, F.150, V.151, D.153 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.27, B:G.149, B:F.150, B:V.151, B:V.151, B:D.153 GOL.6: 6 residues within 4Å: Chain A: G.26, G.27, G.149, F.150, V.151, D.153 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.27, A:G.149, A:F.150, A:V.151, A:V.151, A:D.153 GOL.7: 7 residues within 4Å: Chain C: G.26, G.27, L.102, G.149, F.150, V.151, D.153 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.27, C:G.149, C:F.150, C:V.151, C:V.151, C:D.153 Water bridges: C:G.26 GOL.8: 6 residues within 4Å: Chain D: G.26, G.27, G.149, F.150, V.151, D.153 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.27, D:G.149, D:F.150, D:V.151, D:V.151, D:D.153 Water bridges: D:D.153

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Rabijns, A. et al., Structural analysis of the jacalin-related lectin MornigaM from the black mulberry (Morus nigra) in complex with mannose. Febs J. (2005)

Release Date

2005-10-25

Peptides

mannose-binding lectin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

mannose-binding lectin

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