SMTL ID : 1xar.1 (2 other biounits)

Crystal Structure of a fragment of DC-SIGNR (containing the carbohydrate recognition domain and two repeats of the neck).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-tetramer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: W.124, N.146, E.151, D.163 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.146, A:D.152, A:D.152 NA.2: 4 residues within 4Å: Chain A: E.144, N.146, E.151, D.163 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.163, A:D.163 Water bridges: A:N.162 NA.3: 4 residues within 4Å: Chain B: W.124, N.146, E.151, D.163 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.146, B:E.151 NA.4: 4 residues within 4Å: Chain B: E.144, N.146, E.151, D.163 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.151, B:D.163 NA.5: 4 residues within 4Å: Chain C: W.124, N.146, E.151, D.163 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.146, C:N.146, C:D.163 NA.6: 4 residues within 4Å: Chain C: E.144, N.146, E.151, D.163 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.144, C:D.163, C:D.163 Water bridges: C:N.162 NA.7: 4 residues within 4Å: Chain D: W.124, N.146, E.151, D.163 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.146, D:N.146, D:D.163 NA.8: 4 residues within 4Å: Chain D: E.144, N.146, E.151, D.163 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.163, D:D.163

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Extended Neck Regions Stabilize Tetramers of the Receptors DC-SIGN and DC-SIGNR. J.Biol.Chem. (2005)

Release Date

2004-11-16

Peptides

CD209 antigen-like protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

CD209 antigen-like protein 1

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