SMTL ID : 1v6x.1

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(3)-4-O-methyl-alpha-D-glucuronosyl-xylotriose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

3 x XYP- XYP- XYP- GCV: 4-O-methyl-alpha-D-glucopyranuronic acid-(1-2)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP-GCV.1: 13 residues within 4Å: Chain A: E.44, N.45, K.48, H.81, W.85, Q.88, N.127, E.128, Q.205, E.236, W.266, W.274 Ligands: XYP-XYP.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.88 Water bridges: A:N.45 XYP-XYP-XYP-GCV.3: 8 residues within 4Å: Chain A: D.325, V.326, P.327, N.328, Q.338, Y.340, H.343, N.347 No protein-ligand interaction detected (PLIP) XYP-XYP-XYP-GCV.5: 14 residues within 4Å: Chain B: E.44, N.45, K.48, H.81, W.85, Q.88, N.127, E.128, Q.205, H.207, E.236, W.266, W.274 Ligands: XYP-XYP.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.88

2 x XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose(Non-covalent)

XYP-XYP.2: 11 residues within 4Å: Chain A: E.128, Y.172, N.173, Q.205, H.207, N.209, G.211, S.212, W.274, R.275 Ligands: XYP-XYP-XYP-GCV.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.275 XYP-XYP.6: 10 residues within 4Å: Chain B: E.128, Y.172, N.173, Q.205, N.209, G.211, S.212, W.274, R.275 Ligands: XYP-XYP-XYP-GCV.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.275 Water bridges: B:E.128, B:E.128

1 x XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP.4: 11 residues within 4Å: Chain A: D.408, A.409, V.410, G.411, G.412, Q.421, Y.423, S.424, C.425, S.426, N.430 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.427

2 x XYP: beta-D-xylopyranose(Non-covalent)

XYP.7: 8 residues within 4Å: Chain B: D.325, V.326, P.327, N.328, Q.338, Y.340, H.343, N.347 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.325, B:N.328, B:N.328, B:Q.338, B:H.343, B:N.347 Water bridges: B:H.343 Salt bridges: B:H.343 XYP.8: 9 residues within 4Å: Chain B: D.408, A.409, V.410, G.411, G.412, Q.421, Y.423, N.430, Q.431 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.408, B:G.411, B:G.412, B:N.430, B:N.430, B:Q.431

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujimoto, Z. et al., Crystal structures of decorated xylooligosaccharides bound to a family 10 xylanase from Streptomyces olivaceoviridis E-86. J.Biol.Chem. (2004)

Release Date

2004-04-27

Peptides

ENDO-1,4-BETA-D-XYLANASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ENDO-1,4-BETA-D-XYLANASE

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