SMTL ID : 1uqx.1

Ralstonia solanacearum lectin (RS-IIL) in complex with alpha-methylmannoside

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: N.21, D.100, N.102, D.103 Chain C: G.113 Ligands: CA.2, MMA.3 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Metal complexes: A:N.21, A:D.100, A:D.103, C:G.113 CA.2: 6 residues within 4Å: Chain A: E.94, D.98, D.100, D.103 Ligands: CA.1, MMA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.94, A:E.94, A:D.98, A:D.100, A:D.103 CA.4: 7 residues within 4Å: Chain B: N.21, D.100, N.102, D.103 Chain D: G.113 Ligands: CA.5, MMA.6 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Metal complexes: B:N.21, B:D.100, B:D.103, D:G.113 CA.5: 6 residues within 4Å: Chain B: E.94, D.98, D.100, D.103 Ligands: CA.4, MMA.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.94, B:E.94, B:D.98, B:D.100, B:D.103 CA.7: 7 residues within 4Å: Chain A: G.113 Chain C: N.21, D.100, N.102, D.103 Ligands: CA.8, MMA.9 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Metal complexes: A:G.113, C:N.21, C:D.100, C:D.103 CA.8: 6 residues within 4Å: Chain C: E.94, D.98, D.100, D.103 Ligands: CA.7, MMA.9 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.94, C:E.94, C:D.98, C:D.100, C:D.103 CA.10: 7 residues within 4Å: Chain B: G.113 Chain D: N.21, D.100, N.102, D.103 Ligands: CA.11, MMA.12 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Metal complexes: D:N.21, D:D.100, D:D.103, B:G.113 CA.11: 6 residues within 4Å: Chain D: E.94, D.98, D.100, D.103 Ligands: CA.10, MMA.12 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.94, D:E.94, D:D.98, D:D.100, D:D.103

4 x MMA: methyl alpha-D-mannopyranoside(Non-covalent)

MMA.3: 12 residues within 4Å: Chain A: N.21, A.22, A.23, N.24, E.94, D.95, D.98, D.100, D.103 Chain C: G.113 Ligands: CA.1, CA.2 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:A.23, A:N.24, A:D.98, A:D.103, C:G.113 MMA.6: 12 residues within 4Å: Chain B: N.21, A.22, A.23, N.24, E.94, D.95, D.98, D.100, D.103 Chain D: G.113 Ligands: CA.4, CA.5 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:A.23, B:N.24, B:D.98, B:D.103, D:G.113 MMA.9: 12 residues within 4Å: Chain A: G.113 Chain C: N.21, A.22, A.23, N.24, E.94, D.95, D.98, D.100, D.103 Ligands: CA.7, CA.8 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:A.23, C:N.24, C:D.98, C:D.103, A:G.113 MMA.12: 12 residues within 4Å: Chain B: G.113 Chain D: N.21, A.22, A.23, N.24, E.94, D.95, D.98, D.100, D.103 Ligands: CA.10, CA.11 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain D Hydrogen bonds: B:G.113, D:A.23, D:N.24, D:D.98, D:D.103

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Sudakevitz, D. et al., A New Ralstonia Solanacearum High-Affinity Mannose-Binding Lectin Rs-Iil Structurally Resembling the Pseudomonas Aeruginosa Fucose-Specific Lectin Pa-Iil. Mol.Microbiol. (2004)

Release Date

2004-04-28

Peptides

LECTIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

LECTIN