SMTL ID : 1tfm.1

CRYSTAL STRUCTURE OF A RIBOSOME INACTIVATING PROTEIN IN ITS NATURALLY INHIBITED FORM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain B: W.90, N.92 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- BMA: beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA.2: 5 residues within 4Å: Chain A: F.208, P.211 Chain B: T.7, N.40, N.132 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.3: 3 residues within 4Å: Chain B: D.23, F.25, N.57 No protein-ligand interaction detected (PLIP)

1 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL.4: 5 residues within 4Å: Chain B: D.229, V.230, I.239, Y.241, N.248 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.229, B:V.230, B:N.248

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.5: 3 residues within 4Å: Chain A: N.107, S.109, D.112 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.107 Hydrogen bonds: A:S.109, A:S.109

1 x P6C: 2-AMINO-4-ISOPROPYL-PTERIDINE-6-CARBOXYLIC ACID(Non-covalent)

P6C.6: 6 residues within 4Å: Chain A: Y.75, G.108, S.109, Y.110, R.162, W.193 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.75, A:Y.75, A:Y.110 Salt bridges: A:R.162

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.7: 9 residues within 4Å: Chain B: D.19, V.20, R.21, D.22, D.23, Q.32, W.34, K.37, N.43 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.19, B:D.22, B:D.22, B:D.23, B:N.43

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Mishra, V. et al., CRYSTAL STRUCTURE OF A RIBOSOME INACTIVATING PROTEIN IN ITS NATURALLY INHIBITED FORM. To be Published

Release Date

2004-07-13

Peptides

Himalayan mistletoe ribosome-inactivating protein: A
Himalayan mistletoe ribosome-inactivating protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Himalayan mistletoe ribosome-inactivating protein

Himalayan mistletoe ribosome-inactivating protein

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