SMTL ID : 1sie.1 (4 other biounits)

MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.65 Å

Oligo State

homo-hexamer

Ligands

6 x NAG- GAL- SIA- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-SIA-SIA.1: 9 residues within 4Å: Chain A: Y.72, R.77, G.78, S.89, N.93, K.186, T.291, V.296, H.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.78, A:N.93, A:N.93, A:S.89 Salt bridges: A:K.186 NAG-GAL-SIA-SIA.2: 8 residues within 4Å: Chain B: Y.72, R.77, G.78, I.79, N.93, T.291, V.296, H.298 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.78, B:N.93, B:S.89 NAG-GAL-SIA-SIA.3: 8 residues within 4Å: Chain C: Y.72, R.77, G.78, I.79, N.93, T.291, H.298 Chain D: D.85 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.79 NAG-GAL-SIA-SIA.4: 7 residues within 4Å: Chain D: Y.72, R.77, G.78, N.93, T.291, V.296, H.298 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.93 Salt bridges: D:K.186 NAG-GAL-SIA-SIA.5: 11 residues within 4Å: Chain A: D.85 Chain E: Y.72, R.77, G.78, I.79, S.89, N.93, T.291, N.293, V.296, H.298 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:I.79, E:N.93, E:S.89 Salt bridges: E:K.186 NAG-GAL-SIA-SIA.6: 10 residues within 4Å: Chain F: Y.72, R.77, G.78, I.79, E.87, S.89, N.93, T.291, V.296, H.298 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:I.79, F:N.93, F:N.93, F:S.89 Salt bridges: F:K.186

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Stehle, T. et al., Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments. Structure (1996)

Release Date

1996-06-20

Peptides

POLYOMAVIRUS COAT PROTEIN VP1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

POLYOMAVIRUS COAT PROTEIN VP1

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