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SMTL ID : 1sid.1
(4 other biounits)
MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.65 Å
Oligo State
homo-hexamer
Ligands
6 x
BGC
-
GAL
-
SIA
:
N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
BGC-GAL-SIA.1:
10 residues within 4Å:
Chain A:
Y.72
,
R.77
,
G.78
,
I.79
,
N.93
,
T.94
,
T.291
,
V.296
,
H.298
Chain B:
D.85
6
PLIP interactions
:
6 interactions with chain A
Hydrogen bonds:
A:N.93
,
A:N.93
,
A:Y.72
,
A:Y.72
,
A:R.77
,
A:H.298
Hydrophobic interactions:
A:V.296
Salt bridges:
A:R.77
BGC-GAL-SIA.2:
10 residues within 4Å:
Chain B:
Y.72
,
R.77
,
G.78
,
I.79
,
N.80
,
N.93
,
T.291
,
V.296
,
H.298
Chain C:
D.85
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:N.80
,
B:G.78
,
B:G.78
,
B:N.93
,
B:Y.72
,
B:H.298
Hydrophobic interactions:
B:V.296
Salt bridges:
B:R.77
BGC-GAL-SIA.3:
8 residues within 4Å:
Chain C:
Y.72
,
R.77
,
G.78
,
I.79
,
N.93
,
T.291
,
H.298
Chain D:
D.85
4
PLIP interactions
:
4 interactions with chain C
Hydrogen bonds:
C:N.93
,
C:Y.72
,
C:R.77
,
C:H.298
Salt bridges:
C:R.77
BGC-GAL-SIA.4:
9 residues within 4Å:
Chain D:
Y.72
,
R.77
,
G.78
,
N.80
,
N.93
,
T.291
,
V.296
,
H.298
Chain E:
D.85
7
PLIP interactions
:
7 interactions with chain D
Hydrogen bonds:
D:N.80
,
D:N.93
,
D:Y.72
,
D:Y.72
,
D:Y.72
,
D:R.77
,
D:H.298
Hydrophobic interactions:
D:V.296
Salt bridges:
D:R.77
BGC-GAL-SIA.5:
11 residues within 4Å:
Chain A:
D.85
Chain E:
Y.72
,
R.77
,
G.78
,
I.79
,
N.93
,
T.94
,
T.291
,
N.293
,
V.296
,
H.298
8
PLIP interactions
:
7 interactions with chain E
,
1 interactions with chain A
Hydrogen bonds:
E:G.78
,
E:I.79
,
E:N.93
,
E:T.94
,
E:T.94
,
E:Y.72
,
E:Y.72
,
E:Y.72
,
E:H.298
Hydrophobic interactions:
E:V.296
,
A:D.85
Salt bridges:
E:R.77
,
E:H.298
BGC-GAL-SIA.6:
10 residues within 4Å:
Chain F:
Y.72
,
R.77
,
G.78
,
I.79
,
N.80
,
N.93
,
T.291
,
N.293
,
V.296
,
H.298
5
PLIP interactions
:
5 interactions with chain F
Hydrogen bonds:
F:I.79
,
F:N.93
,
F:Y.72
,
F:R.77
,
F:H.298
Hydrophobic interactions:
F:V.296
Salt bridges:
F:R.77
Links
RCSB
PDBe
PDBj
PDBsum
CATH
PLIP
Citation
Stehle, T. et al., Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments. Structure (1996)
Release Date
1996-06-20
Peptides
POLYOMAVIRUS COAT PROTEIN VP1:
A
B
C
D
E
F
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
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POLYOMAVIRUS COAT PROTEIN VP1
Toggle Identical (BE)
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1sid.5
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1sie.1
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