SMTL ID : 1rv0.1

1930 Swine H1 Hemagglutinin complexed with LSTA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.1: 8 residues within 4Å: Chain A: N.68, E.70, N.91, C.94, A.139, C.140, P.141, R.225 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.68, A:N.91, A:R.225 Water bridges: A:E.70, A:P.141 Salt bridges: A:R.225 NDG.2: 5 residues within 4Å: Chain C: N.68, E.70, N.91, C.94, R.225 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:E.70 Hydrogen bonds: C:N.68, C:E.70, C:E.70, C:N.91, C:R.225, C:R.225 Water bridges: C:E.70 Salt bridges: C:R.225 NDG.3: 6 residues within 4Å: Chain E: N.68, P.69, E.70, N.91, C.94, R.225 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:N.68, E:N.91, E:R.225, E:R.225 Salt bridges: E:R.225

1 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)

DAN.4: 12 residues within 4Å: Chain E: Y.95, R.134, G.135, V.136, T.137, A.138, W.154, V.156, H.184, P.187, L.195, Q.227 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:W.154, E:V.156 Hydrogen bonds: E:Y.95, E:V.136, E:T.137, E:A.138, E:H.184, E:Q.227, E:Q.227, E:Q.227 Water bridges: E:S.146

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Gamblin, S.J. et al., The structure and receptor binding properties of the 1918 influenza hemagglutinin. Science (2004)

Release Date

2004-03-30

Peptides

hemagglutinin: ACE
hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
J

E
L

B
I

D
K

F
M

hemagglutinin

hemagglutinin

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