SMTL ID : 1rdn.1

MANNOSE-BINDING PROTEIN, SUBTILISIN DIGEST FRAGMENT COMPLEX WITH ALPHA-METHYL-D-N-ACETYLGLUCOSAMINIDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)(Non-functional Binders)

NDG.1: 10 residues within 4Å: Chain A: E.77, N.79, V.81, E.85, N.97, D.98, V.99, P.100, D.103 Ligands: CA.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.79, A:E.85, A:N.97, A:N.97 NDG.5: 9 residues within 4Å: Chain B: E.77, N.79, V.81, E.85, N.97, D.98, V.99, D.103 Ligands: CA.7 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.77, B:E.85, B:N.97, B:N.97 Water bridges: B:E.77, B:E.85, B:E.85

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.53, E.57, N.80, E.85, N.86 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.53, A:E.57, A:E.57, A:E.85, H2O.2 CA.3: 6 residues within 4Å: Chain A: E.77, N.79, E.85, N.97, D.98 Ligands: NDG.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.77, A:E.85, A:D.98, A:D.98 CA.6: 5 residues within 4Å: Chain B: D.53, E.57, N.80, E.85, N.86 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.53, B:E.57, B:E.57, B:E.85, H2O.6 CA.7: 6 residues within 4Å: Chain B: E.77, N.79, E.85, N.97, D.98 Ligands: NDG.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.77, B:E.85, B:D.98, B:D.98

1 x CL: CHLORIDE ION(Non-covalent)

CL.4: 3 residues within 4Å: Chain A: N.86, P.100, C.101 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Ng, K.K. et al., Structural analysis of monosaccharide recognition by rat liver mannose-binding protein. J.Biol.Chem. (1996)

Release Date

1996-03-08

Peptides

MANNOSE-BINDING PROTEIN-C: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

MANNOSE-BINDING PROTEIN-C

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