SMTL ID : 1qf3.1

PEANUT LECTIN COMPLEXED WITH METHYL-BETA-GALACTOSE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x MBG: methyl beta-D-galactopyranoside(Non-covalent)

MBG.1: 9 residues within 4Å: Chain A: D.80, A.82, D.83, G.103, G.104, Y.125, N.127, S.211, G.214 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.80, A:D.80, A:D.83, A:G.104, A:N.127, A:S.211 Water bridges: A:E.129, A:L.212, A:G.214 MBG.4: 9 residues within 4Å: Chain B: D.80, A.82, D.83, G.103, G.104, Y.125, N.127, S.211, G.214 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:D.80, B:D.83, B:G.104, B:N.127, B:S.211 Water bridges: B:E.129, B:E.129, B:L.212, B:L.212, B:G.214 MBG.7: 10 residues within 4Å: Chain C: D.80, A.82, D.83, G.103, G.104, Y.125, N.127, E.129, S.211, G.214 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:D.80, C:D.83, C:G.104, C:N.127, C:S.211 Water bridges: C:Y.125, C:L.212 MBG.10: 9 residues within 4Å: Chain D: D.80, A.82, D.83, G.103, G.104, Y.125, N.127, S.211, G.214 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:D.80, D:D.80, D:D.83, D:G.104, D:N.127, D:S.211 Water bridges: D:E.129, D:L.212, D:G.214

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.123, Y.125, N.127, D.132 Ligands: MN.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.123, A:D.123, A:Y.125, A:D.132, H2O.4 CA.5: 5 residues within 4Å: Chain B: D.123, Y.125, N.127, D.132 Ligands: MN.6 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.123, B:Y.125, B:D.132, H2O.8, H2O.8 CA.8: 4 residues within 4Å: Chain C: D.123, Y.125, N.127, D.132 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.123, C:Y.125, C:D.132, H2O.11, H2O.11 CA.11: 4 residues within 4Å: Chain D: D.123, Y.125, N.127, D.132 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.123, D:Y.125, D:D.132, H2O.15, H2O.15

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 5 residues within 4Å: Chain A: E.121, D.123, D.132, H.137 Ligands: CA.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.121, A:D.132, A:H.137, H2O.4, H2O.4 MN.6: 5 residues within 4Å: Chain B: E.121, D.123, D.132, H.137 Ligands: CA.5 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.123, B:D.132, B:H.137, H2O.8, H2O.8 MN.9: 4 residues within 4Å: Chain C: E.121, D.123, D.132, H.137 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.121, C:D.123, C:D.132, C:H.137, H2O.11, H2O.11 MN.12: 5 residues within 4Å: Chain D: E.121, D.123, D.132, H.137, S.147 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.121, D:D.123, D:D.132, D:H.137, H2O.15

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Ravishankar, R. et al., Structures of the complexes of peanut lectin with methyl-beta-galactose and N-acetyllactosamine and a comparative study of carbohydrate binding in Gal/GalNAc-specific legume lectins. Acta Crystallogr.,Sect.D (1999)

Release Date

1999-07-27

Peptides

PROTEIN (PEANUT LECTIN): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PROTEIN (PEANUT LECTIN)

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