SMTL ID : 1pc8.1

Crystal Structure of a novel form of mistletoe lectin from Himalayan Viscum album L. at 3.8A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-functional Binders)

NAG-NAG.1: 4 residues within 4Å: Chain A: E.36 Chain B: W.90, N.92, L.222 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain B: D.23, F.25, P.42, N.57 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.2: 8 residues within 4Å: Chain A: F.208, N.209, P.211 Chain B: T.7, R.9, N.39, N.40, N.132 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.40

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: Y.75, N.107, S.109 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.109

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Mishra, V. et al., Structure of a novel ribosome-inactivating protein from a hemi-parasitic plant inhabiting the northwestern Himalayas. Acta Crystallogr.,Sect.D (2004)

Release Date

2004-06-22

Peptides

Himalayan mistletoe ribosome-inactivating protein: A
Himalayan mistletoe ribosome-inactivating protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Himalayan mistletoe ribosome-inactivating protein

Himalayan mistletoe ribosome-inactivating protein

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