SMTL ID : 1nwt.1 (3 other biounits)

Crystal structure of human cartilage gp39 (HC-gp39) in complex with chitopentaose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.39, I.40, S.41, W.48, R.84 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- NAG- NAG- NDG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG-NAG-NAG-NAG-NDG-NAG.2: 24 residues within 4Å: Chain A: Y.6, W.10, F.37, W.48, G.77, W.78, N.79, A.117, L.119, Y.120, S.158, G.160, T.163, M.183, Y.185, D.186, F.187, W.191, F.240, R.242, E.269, T.272, W.331, L.335 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.10, A:W.48, A:F.240, A:T.272 Hydrogen bonds: A:N.79, A:E.269, A:W.78, A:N.79, A:E.269 Water bridges: A:F.80, A:R.242, A:E.269

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Fusetti, F. et al., Crystal structure and carbohydrate-binding properties of the human cartilage glycoprotein-39. J.Biol.Chem. (2003)

Release Date

2003-08-26

Peptides

Chitinase-3 like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitinase-3 like protein 1

Related Entries With Identical Sequence