- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x CA: CALCIUM ION(Non-covalent)
CA.5: 4 residues within 4Å:- Chain A: D.125, Y.127, N.129, D.132
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.125, A:D.125, A:Y.127, A:D.132, H2O.1
CA.9: 4 residues within 4Å:- Chain B: D.125, Y.127, N.129, D.132
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.125, B:Y.127, B:D.132, H2O.1, H2O.1
CA.13: 4 residues within 4Å:- Chain C: D.125, Y.127, N.129, D.132
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.125, C:Y.127, C:D.132, H2O.1, H2O.2
CA.17: 5 residues within 4Å:- Chain D: D.125, Y.127, N.129, D.132
- Ligands: MN.18
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.125, D:D.125, D:Y.127, D:D.132, H2O.2
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.6: 4 residues within 4Å:- Chain A: E.123, D.125, D.132, H.137
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.123, A:D.125, A:D.132, A:H.137, H2O.1, H2O.1
MN.10: 4 residues within 4Å:- Chain B: E.123, D.125, D.132, H.137
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.123, B:D.125, B:D.132, B:H.137, H2O.1, H2O.1
MN.14: 5 residues within 4Å:- Chain C: E.123, D.125, D.132, H.137, S.147
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.123, C:D.125, C:D.132, C:H.137, H2O.1, H2O.2
MN.18: 5 residues within 4Å:- Chain D: E.123, D.125, D.132, H.137
- Ligands: CA.17
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.123, D:D.125, D:D.132, D:H.137, H2O.2
- 4 x SER: SERINE(Non-covalent)
SER.7: 3 residues within 4Å:- Chain A: Y.127, N.129
- Ligands: A2G.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.129
SER.11: 3 residues within 4Å:- Chain B: Y.127, N.129
- Ligands: A2G.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.129
SER.15: 2 residues within 4Å:- Chain C: Y.127
- Ligands: A2G.16
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Y.127
SER.19: 2 residues within 4Å:- Chain D: Y.127
- Ligands: A2G.20
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.129
- 4 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)
A2G.8: 10 residues within 4Å:- Chain A: D.85, G.102, G.103, Y.127, N.129, G.212, L.213, N.214, V.217
- Ligands: SER.7
7 PLIP interactions:6 interactions with chain A, 1 Ligand-Ligand interactions- Hydrogen bonds: A:D.85, A:G.103, A:N.129, A:N.129, A:L.213, A:N.214, S.7
A2G.12: 10 residues within 4Å:- Chain B: D.85, G.102, G.103, Y.127, N.129, G.212, L.213, N.214, V.217
- Ligands: SER.11
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Ligand interactions- Hydrogen bonds: B:D.85, B:G.103, B:N.129, B:N.129, B:L.213, S.11
A2G.16: 12 residues within 4Å:- Chain C: A.84, D.85, G.102, G.103, F.104, Y.127, N.129, G.212, L.213, N.214, V.217
- Ligands: SER.15
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Ligand interactions- Hydrophobic interactions: C:F.104
- Hydrogen bonds: C:D.85, C:G.103, C:N.129, C:L.213, S.15
A2G.20: 10 residues within 4Å:- Chain D: D.85, G.102, G.103, Y.127, N.129, G.212, L.213, N.214, V.217
- Ligands: SER.19
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:D.85, D:G.103, D:N.129, D:N.129, D:L.213
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Babino, A. et al., The crystal structure of a plant lectin in complex with the Tn antigen. FEBS Lett. (2003)
- Release Date
- 2003-02-25
- Peptides
- Isolectin B4: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x SER: SERINE(Non-covalent)
- 4 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Babino, A. et al., The crystal structure of a plant lectin in complex with the Tn antigen. FEBS Lett. (2003)
- Release Date
- 2003-02-25
- Peptides
- Isolectin B4: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D