SMTL ID : 1n3o.1

Pterocarcpus angolensis lectin in complex with alpha-methyl glucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x GYP: methyl alpha-D-glucopyranoside(Non-covalent)

GYP.1: 10 residues within 4Å: Chain A: A.85, D.86, G.105, G.106, F.132, S.137, N.138, G.220, E.221, Q.222 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.106, A:N.138, A:N.138, A:G.220, A:E.221, A:Q.222, A:Q.222 Water bridges: A:G.104 GYP.4: 9 residues within 4Å: Chain B: A.85, D.86, G.105, G.106, F.132, N.138, G.220, E.221, Q.222 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.106, B:N.138, B:N.138, B:G.220, B:E.221, B:Q.222, B:Q.222

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: E.128, D.130, D.141, H.146 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.128, A:D.130, A:D.141, A:H.146, H2O.1, H2O.1 MN.5: 4 residues within 4Å: Chain B: E.128, D.130, D.141, H.146 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.128, B:D.130, B:D.141, B:H.146, H2O.5, H2O.5

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.130, F.132, N.138, D.141 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.130, A:F.132, A:D.141, H2O.1, H2O.1 CA.6: 4 residues within 4Å: Chain B: D.130, F.132, N.138, D.141 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.130, B:F.132, B:D.141, H2O.5, H2O.5

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Loris, R. et al., Crystal structure of Pterocarpus angolensis lectin in complex with glucose, sucrose, and turanose. J.BIOL.CHEM. (2003)

Release Date

2002-11-20

Peptides

lectin PAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

lectin PAL

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