SMTL ID : 1kwt.1

Rat mannose binding protein A (native, MPD)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-trimer

Ligands

10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 6 residues within 4Å: Chain A: D.89, E.93, D.116, E.121, D.122 Ligands: CA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.89, A:E.93, A:D.116, A:D.122, H2O.20 CA.2: 5 residues within 4Å: Chain A: E.113, N.115, E.121, N.133, D.134 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.113, A:E.121, A:D.134, A:D.134, H2O.126 CA.3: 3 residues within 4Å: Chain A: E.93, D.122 Ligands: CA.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.93, A:D.122, A:D.122, H2O.86 CA.5: 6 residues within 4Å: Chain B: D.89, E.93, D.116, E.121, D.122 Ligands: CA.7 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.89, B:E.93, B:D.116, B:D.122, H2O.175 CA.6: 5 residues within 4Å: Chain B: E.113, N.115, E.121, N.133, D.134 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.113, B:E.121, B:D.134, B:D.134, H2O.259 CA.7: 4 residues within 4Å: Chain B: E.93, D.116, D.122 Ligands: CA.5 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.93, H2O.181, H2O.196, H2O.218, H2O.239 CA.9: 6 residues within 4Å: Chain C: D.89, E.93, D.116, E.121, D.122 Ligands: CA.11 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.89, C:D.89, C:E.93, C:D.122, H2O.309 CA.10: 5 residues within 4Å: Chain C: E.113, N.115, E.121, N.133, D.134 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.113, C:E.121, C:D.134, C:D.134, H2O.396 CA.11: 3 residues within 4Å: Chain C: E.93, D.122 Ligands: CA.9 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.122, C:D.122, H2O.302, H2O.303, H2O.327 CA.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: D.122, S.136, C.137 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: E.121, D.122, S.136, C.137 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain C: D.122, S.136, C.137, Q.138 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Ng, K.K. et al., Orientation of bound ligands in mannose-binding proteins. Implications for multivalent ligand recognition. J.Biol.Chem. (2002)

Release Date

2002-07-05

Peptides

MANNOSE-BINDING PROTEIN A: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

MANNOSE-BINDING PROTEIN A

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