SMTL ID : 1knm.1

Streptomyces lividans Xylan Binding Domain cbm13 in Complex with Lactose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

2 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.1: 8 residues within 4Å: Chain A: D.19, V.20, P.21, D.22, Q.32, W.34, H.37, N.41 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.19, A:D.22, A:Q.32, A:H.37, A:N.41 Water bridges: A:D.22, A:D.22, A:Q.32 BGC-GAL.2: 8 residues within 4Å: Chain A: D.102, A.103, V.104, G.105, N.106, Q.115, Y.117, N.124 9 PLIP interactions: 9 interactions with chain A Water bridges: A:N.106, A:S.120 Hydrogen bonds: A:D.102, A:G.105, A:N.106, A:Q.115, A:Q.115, A:N.124, A:N.124, A:Q.125

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: D.89, R.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.88, A:R.126 Water bridges: A:R.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Notenboom, V. et al., High-resolution crystal structures of the lectin-like xylan binding domain from Streptomyces lividans xylanase 10A with bound substrates reveal a novel mode of xylan binding. Biochemistry (2002)

Release Date

2002-06-19

Peptides

ENDO-1,4-BETA-XYLANASE A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-1,4-BETA-XYLANASE A

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