SMTL ID : 1k9j.1

Complex of DC-SIGNR and GlcNAc2Man3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x MAN- MAN- NAG- MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose

MAN-MAN-NAG-MAN-NAG.1: 16 residues within 4Å: Chain A: T.59, S.60, N.63, R.64, F.65, N.96, E.99, N.101, S.103, E.106, S.112, G.113, N.117, D.118, N.119 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.96, A:S.112, A:T.59, A:N.63, A:N.63, A:R.64, A:G.113 Water bridges: A:N.96, A:S.114

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.72, E.76, N.102, E.106, D.107 Ligands: CA.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.72, A:D.72, A:E.76, A:D.107, H2O.2 CA.3: 6 residues within 4Å: Chain A: E.99, N.101, E.106, N.117, D.118 Ligands: MAN-MAN-NAG-MAN-NAG.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.99, A:E.106, A:D.118, A:D.118 CA.4: 4 residues within 4Å: Chain A: E.76, N.105, D.107 Ligands: CA.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.76, A:D.107, H2O.5, H2O.5, H2O.5

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Structural basis for selective recognition of oligosaccharides by DC-SIGN and DC-SIGNR. Science (2001)

Release Date

2001-12-21

Peptides

mDC-SIGN2 TYPE I ISOFORM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

mDC-SIGN2 TYPE I ISOFORM