SMTL ID : 1k7u.1

Crystal Structure Analysis of crosslinked-WGA3/GlcNAcbeta1,4GlcNAc complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 7 residues within 4Å: Chain A: S.62, Y.64, H.66, E.72, Y.73 Chain B: S.114, E.115 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.73 Hydrogen bonds: A:S.62, A:Y.73, A:Y.73, B:S.114, B:E.115 Water bridges: A:S.43 NAG-NAG.2: 7 residues within 4Å: Chain A: S.114, E.115 Chain B: S.62, Y.64, H.66, E.72, Y.73 8 PLIP interactions: 2 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:S.114, A:E.115, B:S.62, B:H.66, B:Y.73, B:Y.73 Hydrophobic interactions: B:Y.64, B:E.72

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Muraki, M. et al., Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence. Biochim.Biophys.Acta (2002)

Release Date

2002-04-03

Peptides

agglutinin isolectin 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

agglutinin isolectin 3

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