- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-functional Binders)(Non-covalent)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.6: 6 residues within 4Å:- Chain A: Q.96, D.98, E.104, N.119, D.120
- Ligands: BGC-GAL.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.98, A:E.104, A:D.120, A:D.120
CA.8: 6 residues within 4Å:- Chain B: Q.96, D.98, E.104, N.119, D.120
- Ligands: BGC-GAL.2
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.98, B:E.104, B:D.120, B:D.120
CA.11: 6 residues within 4Å:- Chain C: Q.96, D.98, E.104, N.119, D.120
- Ligands: BGC-GAL.3
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.98, C:E.104, C:D.120, C:D.120
CA.13: 6 residues within 4Å:- Chain D: Q.96, D.98, E.104, N.119, D.120
- Ligands: BGC-GAL.4
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.98, D:E.104, D:D.120, D:D.120
CA.15: 6 residues within 4Å:- Chain E: Q.96, D.98, E.104, N.119, D.120
- Ligands: BGC-GAL.5
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.98, E:E.104, E:D.120, E:D.120
CA.22: 6 residues within 4Å:- Chain F: Q.96, D.98, E.104, N.119, D.120
- Ligands: BGC-GAL.17
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:D.98, F:E.104, F:D.120, F:D.120
CA.24: 6 residues within 4Å:- Chain G: Q.96, D.98, E.104, N.119, D.120
- Ligands: BGC-GAL.18
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:D.98, G:E.104, G:D.120, G:D.120
CA.27: 6 residues within 4Å:- Chain H: Q.96, D.98, E.104, N.119, D.120
- Ligands: BGC-GAL.19
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:D.98, H:E.104, H:D.120, H:D.120
CA.29: 6 residues within 4Å:- Chain I: Q.96, D.98, E.104, N.119, D.120
- Ligands: BGC-GAL.20
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:D.98, I:E.104, I:D.120, I:D.120
CA.31: 6 residues within 4Å:- Chain J: Q.96, D.98, E.104, N.119, D.120
- Ligands: BGC-GAL.21
4 PLIP interactions:4 interactions with chain J- Metal complexes: J:D.98, J:E.104, J:D.120, J:D.120
- 10 x NA: SODIUM ION(Non-covalent)(Non-functional Binders)
NA.7: 3 residues within 4Å:- Chain A: Y.15, S.42, Q.132
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.42, A:S.42
NA.9: 4 residues within 4Å:- Chain B: L.13, Y.15, S.42, Q.132
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.42, B:S.42
NA.12: 3 residues within 4Å:- Chain C: Y.15, S.42, Q.132
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.42, C:Q.132
NA.14: 4 residues within 4Å:- Chain D: L.13, Y.15, S.42, Q.132
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Y.15, D:S.42, D:S.42
NA.16: 4 residues within 4Å:- Chain E: L.13, Y.15, S.42, Q.132
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Y.15, E:S.42, E:S.42
- Water bridges: E:Q.132
NA.23: 3 residues within 4Å:- Chain F: Y.15, S.42, Q.132
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Y.15, F:S.42, F:S.42
NA.25: 4 residues within 4Å:- Chain G: L.13, Y.15, S.42, Q.132
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:Y.15, G:S.42, G:Q.132
NA.28: 3 residues within 4Å:- Chain H: Y.15, S.42, Q.132
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:Y.15, H:Y.15, H:S.42
NA.30: 4 residues within 4Å:- Chain I: L.13, Y.15, S.42, Q.132
2 PLIP interactions:2 interactions with chain I- Hydrogen bonds: I:Y.15, I:S.42
NA.32: 4 residues within 4Å:- Chain J: L.13, Y.15, S.42, Q.132
3 PLIP interactions:3 interactions with chain J- Hydrogen bonds: J:S.42, J:Q.132
- Water bridges: J:Q.132
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Walker, J.R. et al., X-ray Crystal Structure of a Galactose-Specific C-Type Lectin Possessing a Novel Decameric Quaternary Structure. Biochemistry (2004)
- Release Date
- 2003-07-01
- Peptides
- Galactose-specific lectin: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-functional Binders)(Non-covalent)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 10 x NA: SODIUM ION(Non-covalent)(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Walker, J.R. et al., X-ray Crystal Structure of a Galactose-Specific C-Type Lectin Possessing a Novel Decameric Quaternary Structure. Biochemistry (2004)
- Release Date
- 2003-07-01
- Peptides
- Galactose-specific lectin: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E