- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-pentamer
- Ligands
- 9 x CA: CALCIUM ION(Non-covalent)
- 4 x CDG: METHYL 4,6-O-[(1R)-1-CARBOXYETHYLIDENE]-BETA-D-GALACTOPYRANOSIDE(Non-covalent)
CDG.3: 10 residues within 4Å:- Chain A: D.58, N.59, L.62, Y.74, K.79, E.136, D.138, Q.148
- Ligands: CA.1, CA.2
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.62
- Hydrogen bonds: A:N.59, A:Y.74, A:Q.148
- Salt bridges: A:K.79
CDG.6: 10 residues within 4Å:- Chain B: D.58, N.59, L.62, Y.74, K.79, E.136, D.138, Q.148
- Ligands: CA.4, CA.5
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.62
- Hydrogen bonds: B:N.59, B:N.59
- Salt bridges: B:K.79
CDG.9: 10 residues within 4Å:- Chain C: D.58, N.59, L.62, Y.74, K.79, E.136, D.138, Q.148
- Ligands: CA.7, CA.8
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:L.62
- Hydrogen bonds: C:N.59, C:Y.74
- Salt bridges: C:K.79
CDG.12: 10 residues within 4Å:- Chain D: D.58, N.59, L.62, Y.74, K.79, E.136, D.138, Q.148
- Ligands: CA.10, CA.11
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:L.62
- Hydrogen bonds: D:N.59, D:N.59, D:Y.74, D:Q.148
- Salt bridges: D:K.79
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Thompson, D. et al., The Structures of Crystalline Complexes of Human Serum Amyloid P Component with its Carbohydrate Ligand, the Cyclic Pyruvate Acetal of Galactose. J.Mol.Biol. (2002)
- Release Date
- 2003-05-22
- Peptides
- SERUM AMYLOID P-COMPONENT: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-pentamer
- Ligands
- 9 x CA: CALCIUM ION(Non-covalent)
- 4 x CDG: METHYL 4,6-O-[(1R)-1-CARBOXYETHYLIDENE]-BETA-D-GALACTOPYRANOSIDE(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Thompson, D. et al., The Structures of Crystalline Complexes of Human Serum Amyloid P Component with its Carbohydrate Ligand, the Cyclic Pyruvate Acetal of Galactose. J.Mol.Biol. (2002)
- Release Date
- 2003-05-22
- Peptides
- SERUM AMYLOID P-COMPONENT: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E